IL_6VYU_058

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_058 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6VYU|1|D|C|1303
6VYU|1|D|G|1304
6VYU|1|D|G|1305
6VYU|1|D|A|1306
6VYU|1|D|U|1307
6VYU|1|D|U|1308
*
6VYU|1|D|A|1329
6VYU|1|D|U|1330
6VYU|1|D|G|1331
6VYU|1|D|A|1332
6VYU|1|D|A|1333
6VYU|1|D|G|1334

Current chains

Chain D

16S rRNA

Nearby chains

Chain X

30S ribosomal protein S13