IL_6VYU_070

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

6VYU|1|a|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_070 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.0702

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6VYU|1|a|G|81
6VYU|1|a|U|82
6VYU|1|a|A|83
6VYU|1|a|A|84
6VYU|1|a|G|85
*
6VYU|1|a|C|97
6VYU|1|a|G|98
6VYU|1|a|U|99
6VYU|1|a|U|100
6VYU|1|a|A|101
6VYU|1|a|U|102
6VYU|1|a|A|103
6VYU|1|a|A|104
6VYU|1|a|C|105

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain e

50S ribosomal protein L29