3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYU_072 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0461
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6VYU|1|a|G|188
6VYU|1|a|G|189
6VYU|1|a|A|190
6VYU|1|a|A|191
6VYU|1|a|C|192
6VYU|1|a|U|193
6VYU|1|a|G|194
*
6VYU|1|a|C|201
6VYU|1|a|U|202
6VYU|1|a|A|203
6VYU|1|a|A|204
6VYU|1|a|G|205
6VYU|1|a|U|206
6VYU|1|a|A|207
6VYU|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L28
Chain m
50S ribosomal protein L34
Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15

Coloring options:


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