IL_6VYU_109

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6VYU|1|a|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_109 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.1896

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYU|1|a|G|1087
6VYU|1|a|A|1088
6VYU|1|a|A|1089
6VYU|1|a|A|1090
*
6VYU|1|a|U|1101
6VYU|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36