IL_6VYU_120

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

6VYU|1|a|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_120 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.2674

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6VYU|1|a|U|1415
6VYU|1|a|G|1416
*
6VYU|1|a|C|1582
6VYU|1|a|A|1583
6VYU|1|a|U|1584
6VYU|1|a|C|1585
6VYU|1|a|A|1586
6VYU|1|a|G|1587

Current chains

Chain a

23S rRNA

Nearby chains