IL_6VYU_138
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GC*GAU
- Length
- 5 nucleotides
- Bulged bases
- 6VYU|1|a|A|1981
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYU_138 not in the Motif Atlas
- Homologous match to IL_5J7L_312
- Geometric discrepancy: 0.0933
- The information below is about IL_5J7L_312
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
6VYU|1|a|G|1770
6VYU|1|a|C|1771
*
6VYU|1|a|G|1980
6VYU|1|a|A|1981
6VYU|1|a|U|1982
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- 50S ribosomal protein L2
Coloring options: