IL_6VYU_145

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGAAAUCCUUG*CUG

Length

14 nucleotides

Bulged bases

6VYU|1|a|A|1938, 6VYU|1|a|U|1944

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_145 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.072

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6VYU|1|a|C|1934
6VYU|1|a|G|1935
6VYU|1|a|A|1936
6VYU|1|a|A|1937
6VYU|1|a|A|1938
6VYU|1|a|U|1940
6VYU|1|a|C|1941
6VYU|1|a|C|1942
6VYU|1|a|U|1943
6VYU|1|a|U|1944
6VYU|1|a|G|1945
*
6VYU|1|a|C|1961
6VYU|1|a|U|1963
6VYU|1|a|G|1964

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2