3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
UGGGAG*CGACCUUGAAAUACCA
Length
22 nucleotides
Bulged bases
6VYU|1|a|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VYU|1|a|U|2122
6VYU|1|a|G|2123
6VYU|1|a|G|2124
6VYU|1|a|G|2125
6VYU|1|a|A|2126
6VYU|1|a|G|2127
*
6VYU|1|a|C|2161
6VYU|1|a|G|2162
6VYU|1|a|A|2163
6VYU|1|a|C|2164
6VYU|1|a|C|2165
6VYU|1|a|U|2166
6VYU|1|a|U|2167
6VYU|1|a|G|2168
6VYU|1|a|A|2169
6VYU|1|a|A|2170
6VYU|1|a|A|2171
6VYU|1|a|U|2172
6VYU|1|a|A|2173
6VYU|1|a|C|2174
6VYU|1|a|C|2175
6VYU|1|a|A|2176

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA

Coloring options:

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