IL_6VYU_163
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYU_163 not in the Motif Atlas
- Geometric match to IL_5J7L_337
- Geometric discrepancy: 0.0658
- The information below is about IL_5J7L_337
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
6VYU|1|a|A|2459
6VYU|1|a|U|2460
6VYU|1|a|A|2461
*
6VYU|1|a|U|2489
6VYU|1|a|G|2490
6VYU|1|a|U|2491
6VYU|1|a|U|2492
6VYU|1|a|U|2493
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain v
- 50S ribosomal protein L16
Coloring options: