3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYU_180 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.0633
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

6VYU|1|a|U|2847
6VYU|1|a|G|2848
6VYU|1|a|U|2849
6VYU|1|a|A|2850
6VYU|1|a|A|2851
6VYU|1|a|G|2852
*
6VYU|1|a|U|2865
6VYU|1|a|U|2866
6VYU|1|a|G|2867
6VYU|1|a|A|2868
6VYU|1|a|G|2869

Current chains

Chain a
23S rRNA

Nearby chains

Chain w
50S ribosomal protein L17
Chain y
50S ribosomal protein L19

Coloring options:


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