IL_6VYU_181

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

6VYU|1|d|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_181 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6VYU|1|d|C|17
6VYU|1|d|G|18
*
6VYU|1|d|U|65
6VYU|1|d|A|66
6VYU|1|d|G|67

Current chains

Chain d

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA