IL_6VYW_047
3D structure
- PDB id
- 6VYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GCU*GC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYW_047 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.2639
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
6VYW|1|D|G|1050
6VYW|1|D|C|1051
6VYW|1|D|U|1052
*
6VYW|1|D|G|1206
6VYW|1|D|C|1208
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S3
- Chain S
- 30S ribosomal protein S14
Coloring options: