IL_6VYW_077

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6VYW|1|a|A|504, 6VYW|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYW_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6VYW|1|a|G|481
6VYW|1|a|A|482
6VYW|1|a|A|483
6VYW|1|a|C|484
*
6VYW|1|a|G|496
6VYW|1|a|A|497
6VYW|1|a|G|498
6VYW|1|a|U|499
6VYW|1|a|G|500
6VYW|1|a|A|501
6VYW|1|a|A|502
6VYW|1|a|A|503
6VYW|1|a|A|504
6VYW|1|a|A|505
6VYW|1|a|G|506
6VYW|1|a|A|507
6VYW|1|a|A|508
6VYW|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24