3D structure

PDB id
6VYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYW_078 not in the Motif Atlas
Homologous match to IL_5J7L_256
Geometric discrepancy: 0.0501
The information below is about IL_5J7L_256
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

6VYW|1|a|G|536
6VYW|1|a|G|537
6VYW|1|a|A|538
6VYW|1|a|G|539
*
6VYW|1|a|U|554
6VYW|1|a|G|555
6VYW|1|a|A|556
6VYW|1|a|C|557

Current chains

Chain a
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L13
Chain z
50S ribosomal protein L20

Coloring options:


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