3D structure

PDB id
6VYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
6VYW|1|a|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYW_133 not in the Motif Atlas
Homologous match to IL_5J7L_307
Geometric discrepancy: 0.0479
The information below is about IL_5J7L_307
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6VYW|1|a|A|1669
6VYW|1|a|C|1670
6VYW|1|a|U|1671
6VYW|1|a|A|1672
6VYW|1|a|G|1673
6VYW|1|a|G|1674
*
6VYW|1|a|C|1990
6VYW|1|a|U|1991
6VYW|1|a|G|1992
6VYW|1|a|U|1993

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14

Coloring options:


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