IL_6VYW_193

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VYW|1|D|A|1257, 6VYW|1|D|A|1280, 6VYW|1|D|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYW|1|D|G|1255
6VYW|1|D|A|1256
6VYW|1|D|A|1257
6VYW|1|D|G|1258
6VYW|1|D|C|1259
6VYW|1|D|G|1260
6VYW|1|D|A|1261
6VYW|1|D|C|1262
6VYW|1|D|C|1263
*
6VYW|1|D|G|1272
6VYW|1|D|C|1273
6VYW|1|D|A|1274
6VYW|1|D|A|1275
6VYW|1|D|G|1276
6VYW|1|D|C|1277
6VYW|1|D|G|1278
6VYW|1|D|G|1279
6VYW|1|D|A|1280
6VYW|1|D|C|1281
6VYW|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19