IL_6VYW_196
3D structure
- PDB id
- 6VYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GCAAGG*CCAACC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYW_196 not in the Motif Atlas
- Geometric match to IL_8C3A_028
- Geometric discrepancy: 0.398
- The information below is about IL_8C3A_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VYW|1|a|G|875
6VYW|1|a|C|876
6VYW|1|a|A|877
6VYW|1|a|A|878
6VYW|1|a|G|879
6VYW|1|a|G|880
*
6VYW|1|a|C|897
6VYW|1|a|C|898
6VYW|1|a|A|899
6VYW|1|a|A|900
6VYW|1|a|C|901
6VYW|1|a|C|902
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain v
- 50S ribosomal protein L16
Coloring options: