IL_6VYW_201

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

6VYW|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYW|1|a|G|2123
6VYW|1|a|G|2124
6VYW|1|a|G|2125
6VYW|1|a|A|2126
6VYW|1|a|G|2127
*
6VYW|1|a|C|2161
6VYW|1|a|G|2162
6VYW|1|a|A|2163
6VYW|1|a|C|2164
6VYW|1|a|C|2165
6VYW|1|a|U|2166
6VYW|1|a|U|2167
6VYW|1|a|G|2168
6VYW|1|a|A|2169
6VYW|1|a|A|2170
6VYW|1|a|A|2171
6VYW|1|a|U|2172
6VYW|1|a|A|2173
6VYW|1|a|C|2174
6VYW|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA