IL_6VYX_045

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYX|1|D|U|1025, 6VYX|1|D|U|1030, 6VYX|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|D|G|1003
6VYX|1|D|A|1004
6VYX|1|D|A|1005
6VYX|1|D|G|1006
*
6VYX|1|D|U|1023
6VYX|1|D|G|1024
6VYX|1|D|U|1025
6VYX|1|D|G|1026
6VYX|1|D|C|1027
6VYX|1|D|C|1028
6VYX|1|D|U|1029
6VYX|1|D|U|1030
6VYX|1|D|C|1031
6VYX|1|D|G|1032
6VYX|1|D|G|1033
6VYX|1|D|G|1034
6VYX|1|D|A|1035
6VYX|1|D|A|1036
6VYX|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14