IL_6VYX_061

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GUAC*GAAGUC

Length

10 nucleotides

Bulged bases

6VYX|1|D|A|1493

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_061 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5022

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6VYX|1|D|G|1405
6VYX|1|D|U|1406
6VYX|1|D|A|1408
6VYX|1|D|C|1409
*
6VYX|1|D|G|1491
6VYX|1|D|A|1492
6VYX|1|D|A|1493
6VYX|1|D|G|1494
6VYX|1|D|U|1495
6VYX|1|D|C|1496

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain R

30S ribosomal protein S12

Chain a

Large subunit ribosomal RNA; LSU rRNA