3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
GUAAG*CGUUAUAAC
Length
14 nucleotides
Bulged bases
6VYX|1|a|U|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYX_070 not in the Motif Atlas
Homologous match to IL_5J7L_248
Geometric discrepancy: 0.0702
The information below is about IL_5J7L_248
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37015.1
Basepair signature
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
Number of instances in this motif group
1

Unit IDs

6VYX|1|a|G|81
6VYX|1|a|U|82
6VYX|1|a|A|83
6VYX|1|a|A|84
6VYX|1|a|G|85
*
6VYX|1|a|C|97
6VYX|1|a|G|98
6VYX|1|a|U|99
6VYX|1|a|U|100
6VYX|1|a|A|101
6VYX|1|a|U|102
6VYX|1|a|A|103
6VYX|1|a|A|104
6VYX|1|a|C|105

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24
Chain e
50S ribosomal protein L29

Coloring options:


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