IL_6VYX_156

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VYX|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|a|U|2122
6VYX|1|a|G|2123
6VYX|1|a|G|2124
6VYX|1|a|G|2125
6VYX|1|a|A|2126
6VYX|1|a|G|2127
*
6VYX|1|a|C|2161
6VYX|1|a|G|2162
6VYX|1|a|A|2163
6VYX|1|a|C|2164
6VYX|1|a|C|2165
6VYX|1|a|U|2166
6VYX|1|a|U|2167
6VYX|1|a|G|2168
6VYX|1|a|A|2169
6VYX|1|a|A|2170
6VYX|1|a|A|2171
6VYX|1|a|U|2172
6VYX|1|a|A|2173
6VYX|1|a|C|2174
6VYX|1|a|C|2175
6VYX|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA