IL_6VYX_157

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6VYX|1|a|U|2131, 6VYX|1|a|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_157 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2917

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6VYX|1|a|C|2129
6VYX|1|a|U|2130
6VYX|1|a|U|2131
6VYX|1|a|U|2132
6VYX|1|a|G|2133
6VYX|1|a|A|2134
6VYX|1|a|A|2135
6VYX|1|a|G|2136
*
6VYX|1|a|U|2155
6VYX|1|a|G|2156
6VYX|1|a|G|2157
6VYX|1|a|A|2158
6VYX|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains