IL_6VYX_192

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

6VYX|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|D|G|144
6VYX|1|D|G|145
6VYX|1|D|G|146
6VYX|1|D|G|147
6VYX|1|D|G|148
6VYX|1|D|A|149
6VYX|1|D|U|150
6VYX|1|D|A|151
6VYX|1|D|A|152
6VYX|1|D|C|153
*
6VYX|1|D|G|168
6VYX|1|D|C|169
6VYX|1|D|U|170
6VYX|1|D|A|171
6VYX|1|D|A|172
6VYX|1|D|U|173
6VYX|1|D|A|174
6VYX|1|D|C|175
6VYX|1|D|C|176
6VYX|1|D|G|177
6VYX|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20