IL_6VYX_197

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VYX|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|a|C|1043
6VYX|1|a|C|1044
6VYX|1|a|C|1045
6VYX|1|a|A|1046
6VYX|1|a|G|1047
6VYX|1|a|A|1048
6VYX|1|a|C|1049
6VYX|1|a|A|1050
6VYX|1|a|G|1051
6VYX|1|a|C|1052
6VYX|1|a|C|1053
*
6VYX|1|a|G|1106
6VYX|1|a|G|1107
6VYX|1|a|U|1108
6VYX|1|a|C|1109
6VYX|1|a|G|1110
6VYX|1|a|A|1111
6VYX|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36