IL_6VYY_026
3D structure
- PDB id
- 6VYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 6VYY|1|D|A|572
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYY_026 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.0879
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
6VYY|1|D|C|569
6VYY|1|D|G|570
6VYY|1|D|U|571
6VYY|1|D|A|572
6VYY|1|D|A|573
6VYY|1|D|A|574
6VYY|1|D|G|575
*
6VYY|1|D|C|880
6VYY|1|D|G|881
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S8
- Chain R
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
Coloring options: