IL_6VYY_075

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2432

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6VYY|1|a|C|274
6VYY|1|a|C|275
6VYY|1|a|U|276
6VYY|1|a|G|277
6VYY|1|a|A|278
6VYY|1|a|A|279
6VYY|1|a|U|280
6VYY|1|a|C|281
*
6VYY|1|a|G|359
6VYY|1|a|U|360
6VYY|1|a|G|361
6VYY|1|a|A|362
6VYY|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains