IL_6VYY_156

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VYY|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYY|1|a|U|2122
6VYY|1|a|G|2123
6VYY|1|a|G|2124
6VYY|1|a|G|2125
6VYY|1|a|A|2126
6VYY|1|a|G|2127
*
6VYY|1|a|C|2161
6VYY|1|a|G|2162
6VYY|1|a|A|2163
6VYY|1|a|C|2164
6VYY|1|a|C|2165
6VYY|1|a|U|2166
6VYY|1|a|U|2167
6VYY|1|a|G|2168
6VYY|1|a|A|2169
6VYY|1|a|A|2170
6VYY|1|a|A|2171
6VYY|1|a|U|2172
6VYY|1|a|A|2173
6VYY|1|a|C|2174
6VYY|1|a|C|2175
6VYY|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA