IL_6VYY_192

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

6VYY|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYY|1|D|G|144
6VYY|1|D|G|145
6VYY|1|D|G|146
6VYY|1|D|G|147
6VYY|1|D|G|148
6VYY|1|D|A|149
6VYY|1|D|U|150
6VYY|1|D|A|151
6VYY|1|D|A|152
6VYY|1|D|C|153
*
6VYY|1|D|G|168
6VYY|1|D|C|169
6VYY|1|D|U|170
6VYY|1|D|A|171
6VYY|1|D|A|172
6VYY|1|D|U|173
6VYY|1|D|A|174
6VYY|1|D|C|175
6VYY|1|D|C|176
6VYY|1|D|G|177
6VYY|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20