IL_6VYY_197

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VYY|1|a|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYY|1|a|C|1043
6VYY|1|a|C|1044
6VYY|1|a|C|1045
6VYY|1|a|A|1046
6VYY|1|a|G|1047
6VYY|1|a|A|1048
6VYY|1|a|C|1049
6VYY|1|a|A|1050
6VYY|1|a|G|1051
6VYY|1|a|C|1052
6VYY|1|a|C|1053
*
6VYY|1|a|G|1106
6VYY|1|a|G|1107
6VYY|1|a|U|1108
6VYY|1|a|C|1109
6VYY|1|a|G|1110
6VYY|1|a|A|1111
6VYY|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36