IL_6VYZ_013

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGACC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYZ_013 not in the Motif Atlas

Homologous match to IL_5J7L_013

Geometric discrepancy: 0.4365

The information below is about IL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6VYZ|1|D|G|203
6VYZ|1|D|G|204
6VYZ|1|D|A|205
6VYZ|1|D|C|206
6VYZ|1|D|C|207
*
6VYZ|1|D|G|212
6VYZ|1|D|G|213
6VYZ|1|D|C|214

Current chains

Chain D

16S rRNA

Nearby chains