IL_6VYZ_045

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6VYZ|1|D|U|1025, 6VYZ|1|D|U|1030, 6VYZ|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYZ|1|D|G|1003
6VYZ|1|D|A|1004
6VYZ|1|D|A|1005
6VYZ|1|D|G|1006
*
6VYZ|1|D|U|1023
6VYZ|1|D|G|1024
6VYZ|1|D|U|1025
6VYZ|1|D|G|1026
6VYZ|1|D|C|1027
6VYZ|1|D|C|1028
6VYZ|1|D|U|1029
6VYZ|1|D|U|1030
6VYZ|1|D|C|1031
6VYZ|1|D|G|1032
6VYZ|1|D|G|1033
6VYZ|1|D|G|1034
6VYZ|1|D|A|1035
6VYZ|1|D|A|1036
6VYZ|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14