IL_6VYZ_156

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VYZ|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYZ|1|a|U|2122
6VYZ|1|a|G|2123
6VYZ|1|a|G|2124
6VYZ|1|a|G|2125
6VYZ|1|a|A|2126
6VYZ|1|a|G|2127
*
6VYZ|1|a|C|2161
6VYZ|1|a|G|2162
6VYZ|1|a|A|2163
6VYZ|1|a|C|2164
6VYZ|1|a|C|2165
6VYZ|1|a|U|2166
6VYZ|1|a|U|2167
6VYZ|1|a|G|2168
6VYZ|1|a|A|2169
6VYZ|1|a|A|2170
6VYZ|1|a|A|2171
6VYZ|1|a|U|2172
6VYZ|1|a|A|2173
6VYZ|1|a|C|2174
6VYZ|1|a|C|2175
6VYZ|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA