IL_6VZ2_014
3D structure
- PDB id
- 6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 6VZ2|1|D|U|244, 6VZ2|1|D|C|280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ2_014 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.0755
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VZ2|1|D|G|242
6VZ2|1|D|A|243
6VZ2|1|D|U|244
6VZ2|1|D|U|245
6VZ2|1|D|A|246
6VZ2|1|D|G|247
*
6VZ2|1|D|C|277
6VZ2|1|D|G|278
6VZ2|1|D|A|279
6VZ2|1|D|C|280
6VZ2|1|D|G|281
6VZ2|1|D|A|282
6VZ2|1|D|U|283
6VZ2|1|D|C|284
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain R
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
Coloring options: