3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGCCAG*CGGUAAUAC
Length
15 nucleotides
Bulged bases
6VZ2|1|D|A|532, 6VZ2|1|D|U|534, 6VZ2|1|D|A|535
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_025 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.0768
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6VZ2|1|D|G|515
6VZ2|1|D|G|517
6VZ2|1|D|C|518
6VZ2|1|D|C|519
6VZ2|1|D|A|520
6VZ2|1|D|G|521
*
6VZ2|1|D|C|528
6VZ2|1|D|G|529
6VZ2|1|D|G|530
6VZ2|1|D|U|531
6VZ2|1|D|A|532
6VZ2|1|D|A|533
6VZ2|1|D|U|534
6VZ2|1|D|A|535
6VZ2|1|D|C|536

Current chains

Chain D
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S3
Chain J
30S ribosomal protein S4
Chain R
30S ribosomal protein S12

Coloring options:


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