3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
6VZ2|1|D|U|1286
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_055 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.0971
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

6VZ2|1|D|U|1247
6VZ2|1|D|A|1248
6VZ2|1|D|C|1249
6VZ2|1|D|A|1250
6VZ2|1|D|A|1251
6VZ2|1|D|A|1252
6VZ2|1|D|G|1253
*
6VZ2|1|D|C|1284
6VZ2|1|D|A|1285
6VZ2|1|D|U|1286
6VZ2|1|D|A|1287
6VZ2|1|D|A|1288
6VZ2|1|D|A|1289
6VZ2|1|D|G|1290

Current chains

Chain D
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S7
Chain O
30S ribosomal protein S9
Chain P
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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