IL_6VZ2_172
3D structure
- PDB id
- 6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ2_172 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.069
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VZ2|1|a|C|2652
6VZ2|1|a|U|2653
6VZ2|1|a|A|2654
6VZ2|1|a|G|2655
6VZ2|1|a|U|2656
6VZ2|1|a|A|2657
6VZ2|1|a|C|2658
*
6VZ2|1|a|G|2663
6VZ2|1|a|G|2664
6VZ2|1|a|A|2665
6VZ2|1|a|C|2666
6VZ2|1|a|C|2667
6VZ2|1|a|G|2668
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- 50S ribosomal protein L6
- Chain t
- 50S ribosomal protein L14
Coloring options: