IL_6VZ2_199
3D structure
- PDB id
- 6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ2_199 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.0457
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
6VZ2|1|a|G|1666
6VZ2|1|a|G|1667
6VZ2|1|a|A|1668
6VZ2|1|a|A|1669
6VZ2|1|a|C|1670
6VZ2|1|a|U|1671
6VZ2|1|a|A|1672
6VZ2|1|a|G|1673
6VZ2|1|a|G|1674
*
6VZ2|1|a|C|1990
6VZ2|1|a|U|1991
6VZ2|1|a|G|1992
6VZ2|1|a|U|1993
6VZ2|1|a|C|1994
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain t
- 50S ribosomal protein L14
Coloring options: