3D structure

PDB id
6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ2_199 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0457
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6VZ2|1|a|G|1666
6VZ2|1|a|G|1667
6VZ2|1|a|A|1668
6VZ2|1|a|A|1669
6VZ2|1|a|C|1670
6VZ2|1|a|U|1671
6VZ2|1|a|A|1672
6VZ2|1|a|G|1673
6VZ2|1|a|G|1674
*
6VZ2|1|a|C|1990
6VZ2|1|a|U|1991
6VZ2|1|a|G|1992
6VZ2|1|a|U|1993
6VZ2|1|a|C|1994

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14

Coloring options:


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