3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ3_072 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0462
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6VZ3|1|a|G|188
6VZ3|1|a|G|189
6VZ3|1|a|A|190
6VZ3|1|a|A|191
6VZ3|1|a|C|192
6VZ3|1|a|U|193
6VZ3|1|a|G|194
*
6VZ3|1|a|C|201
6VZ3|1|a|U|202
6VZ3|1|a|A|203
6VZ3|1|a|A|204
6VZ3|1|a|G|205
6VZ3|1|a|U|206
6VZ3|1|a|A|207
6VZ3|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L28
Chain m
50S ribosomal protein L34
Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15

Coloring options:


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