3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ3_081 not in the Motif Atlas
Geometric match to IL_7RQB_017
Geometric discrepancy: 0.068
The information below is about IL_7RQB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
270

Unit IDs

6VZ3|1|a|C|672
6VZ3|1|a|C|673
6VZ3|1|a|G|674
*
6VZ3|1|a|C|806
6VZ3|1|a|U|807
6VZ3|1|a|G|808

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L4
Chain u
50S ribosomal protein L15

Coloring options:


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