IL_6VZ3_113
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ3_113 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0565
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6VZ3|1|a|A|1262
6VZ3|1|a|U|1263
6VZ3|1|a|A|1264
6VZ3|1|a|A|1265
6VZ3|1|a|G|1266
6VZ3|1|a|U|1267
6VZ3|1|a|A|1268
6VZ3|1|a|A|1269
*
6VZ3|1|a|U|2011
6VZ3|1|a|G|2012
6VZ3|1|a|A|2013
6VZ3|1|a|A|2014
6VZ3|1|a|A|2015
6VZ3|1|a|U|2016
6VZ3|1|a|U|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
Coloring options: