IL_6VZ3_144
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GC*GCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ3_144 not in the Motif Atlas
- Geometric match to IL_7RQB_076
- Geometric discrepancy: 0.0656
- The information below is about IL_7RQB_076
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_59677.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 19
Unit IDs
6VZ3|1|a|G|1933
6VZ3|1|a|C|1934
*
6VZ3|1|a|G|1964
6VZ3|1|a|C|1965
6VZ3|1|a|A|1966
6VZ3|1|a|C|1967
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
Coloring options: