IL_6VZ3_144

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ3_144 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.0656

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

6VZ3|1|a|G|1933
6VZ3|1|a|C|1934
*
6VZ3|1|a|G|1964
6VZ3|1|a|C|1965
6VZ3|1|a|A|1966
6VZ3|1|a|C|1967

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA