IL_6VZ3_156

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6VZ3|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ3|1|a|U|2122
6VZ3|1|a|G|2123
6VZ3|1|a|G|2124
6VZ3|1|a|G|2125
6VZ3|1|a|A|2126
6VZ3|1|a|G|2127
*
6VZ3|1|a|C|2161
6VZ3|1|a|G|2162
6VZ3|1|a|A|2163
6VZ3|1|a|C|2164
6VZ3|1|a|C|2165
6VZ3|1|a|U|2166
6VZ3|1|a|U|2167
6VZ3|1|a|G|2168
6VZ3|1|a|A|2169
6VZ3|1|a|A|2170
6VZ3|1|a|A|2171
6VZ3|1|a|U|2172
6VZ3|1|a|A|2173
6VZ3|1|a|C|2174
6VZ3|1|a|C|2175
6VZ3|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA