IL_6VZ3_197

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

6VZ3|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ3|1|a|C|1043
6VZ3|1|a|C|1044
6VZ3|1|a|C|1045
6VZ3|1|a|A|1046
6VZ3|1|a|G|1047
6VZ3|1|a|A|1048
6VZ3|1|a|C|1049
6VZ3|1|a|A|1050
6VZ3|1|a|G|1051
6VZ3|1|a|C|1052
6VZ3|1|a|C|1053
*
6VZ3|1|a|G|1106
6VZ3|1|a|G|1107
6VZ3|1|a|U|1108
6VZ3|1|a|C|1109
6VZ3|1|a|G|1110
6VZ3|1|a|A|1111
6VZ3|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36