IL_6VZ5_054

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

6VZ5|1|D|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_054 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6VZ5|1|D|C|1158
6VZ5|1|D|U|1159
6VZ5|1|D|G|1160
6VZ5|1|D|C|1161
*
6VZ5|1|D|G|1175
6VZ5|1|D|A|1176
6VZ5|1|D|G|1177
6VZ5|1|D|G|1178
6VZ5|1|D|A|1179
6VZ5|1|D|A|1180
6VZ5|1|D|G|1181

Current chains

Chain D

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain O

30S ribosomal protein S9