3D structure

PDB id
6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
6VZ5|1|a|A|1899, 6VZ5|1|a|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ5_141 not in the Motif Atlas
Homologous match to IL_5J7L_315
Geometric discrepancy: 0.0979
The information below is about IL_5J7L_315
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

6VZ5|1|a|U|1841
6VZ5|1|a|G|1842
*
6VZ5|1|a|U|1898
6VZ5|1|a|A|1899
6VZ5|1|a|A|1900
6VZ5|1|a|A|1901

Current chains

Chain a
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L2

Coloring options:


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