IL_6VZ5_192

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

6VZ5|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ5|1|D|G|144
6VZ5|1|D|G|145
6VZ5|1|D|G|146
6VZ5|1|D|G|147
6VZ5|1|D|G|148
6VZ5|1|D|A|149
6VZ5|1|D|U|150
6VZ5|1|D|A|151
6VZ5|1|D|A|152
6VZ5|1|D|C|153
*
6VZ5|1|D|G|168
6VZ5|1|D|C|169
6VZ5|1|D|U|170
6VZ5|1|D|A|171
6VZ5|1|D|A|172
6VZ5|1|D|U|173
6VZ5|1|D|A|174
6VZ5|1|D|C|175
6VZ5|1|D|C|176
6VZ5|1|D|G|177
6VZ5|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20