IL_6VZ5_193

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6VZ5|1|D|A|1257, 6VZ5|1|D|A|1280, 6VZ5|1|D|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ5|1|D|G|1255
6VZ5|1|D|A|1256
6VZ5|1|D|A|1257
6VZ5|1|D|G|1258
6VZ5|1|D|C|1259
6VZ5|1|D|G|1260
6VZ5|1|D|A|1261
6VZ5|1|D|C|1262
6VZ5|1|D|C|1263
*
6VZ5|1|D|G|1272
6VZ5|1|D|C|1273
6VZ5|1|D|A|1274
6VZ5|1|D|A|1275
6VZ5|1|D|G|1276
6VZ5|1|D|C|1277
6VZ5|1|D|G|1278
6VZ5|1|D|G|1279
6VZ5|1|D|A|1280
6VZ5|1|D|C|1281
6VZ5|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19