IL_6VZ5_196

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_196 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3981

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VZ5|1|a|G|875
6VZ5|1|a|C|876
6VZ5|1|a|A|877
6VZ5|1|a|A|878
6VZ5|1|a|G|879
6VZ5|1|a|G|880
*
6VZ5|1|a|C|897
6VZ5|1|a|C|898
6VZ5|1|a|A|899
6VZ5|1|a|A|900
6VZ5|1|a|C|901
6VZ5|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16