IL_6VZ7_109

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6VZ7|1|a|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_109 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.189

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6VZ7|1|a|G|1087
6VZ7|1|a|A|1088
6VZ7|1|a|A|1089
6VZ7|1|a|A|1090
*
6VZ7|1|a|U|1101
6VZ7|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36